Welcome to ProtY's documentation!
=================================

This project is about using a pretrained protein transformer architecture to create embeddings
of various proteins, and then performing nonlinear dimensionality reduction on those embeddings
to see which kinds of similarities in protein function/structure we can restore.
After installing, you can use it as a pipeline, or you can use it function by function.

Current version: 1.0.0
----------------------

Release: 2025

Install
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.. code-block:: bash

    pip install proty

.. toctree::
   :maxdepth: 2
   :caption: Contents

   modules

Git Hub
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The code for this project is available on GitHub at the following link:
https://github.com/uhlarbrigi/PEPTIDE-SEQUENCE-EMBEDDING-AND-CLUSTERING-VISUALIZATION.git


Google Colab
------------
The code for this project, for demo is available on Google Colab at the following link:
https://colab.research.google.com/drive/1FYW5WVtZ_9n3e8NeK7YANI2zT2-gxNxb?usp=sharing

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`