Welcome to ProtY’s documentation!
This project is about using a pretrained protein transformer architecture to create embeddings of various proteins, and then performing nonlinear dimensionality reduction on those embeddings to see which kinds of similarities in protein function/structure we can restore. After installing, you can use it as a pipeline, or you can use it function by function.
Current version: 1.0.0
Release: 2025
Install
pip install proty
Contents
Git Hub
The code for this project is available on GitHub at the following link: https://github.com/uhlarbrigi/PEPTIDE-SEQUENCE-EMBEDDING-AND-CLUSTERING-VISUALIZATION.git
Google Colab
The code for this project, for demo is available on Google Colab at the following link: https://colab.research.google.com/drive/1FYW5WVtZ_9n3e8NeK7YANI2zT2-gxNxb?usp=sharing